Glass manufacturing facility demolished in 2007.
From episode 3x01 "Smith and Jones".
Source: The Doctor Who Locations Guide
The Daleks plan their takeover from an underground base in episode 3x04 "Daleks in Manhattan". From episode 3x05 "Evolution of the Daleks".
Two of the crew members vent the fuel from the ship in episode 3x07 "42".
Martha, Jack, and the Doctor are taken into the tunnels around the rocket base in episode 3x11 "Utopia".
Martha, Jack, and the Doctor arrive aboard the Valiant in episode 3x12 "The Sound of Drums". Jack is held down in the mechanical section in episode 3x13 "Last of the Time Lords".
Martha and Thomas Milligan travel to Docherty's base and capture one of the Toclafane balls in episode 3x13 "Last of the Time Lords".