Doctor Who
Grayle's Mansion (cellar)
Rory is locked in the cellar where he encounters some baby angels in episode 7x05 “The Angels Take Manhattan”.
Source: The Doctor Who Locations Guide
UNIT Safe House (interior)
Kate runs the UNIT operation with the Zygon in episode 9x07 “The Zygon Invasion”. Zygon!Clara gets the Osgoods' laptop from a safe and then talks to the Doctor on the phone in episode 9x08 “The Zygon Inversion”.
Source: The Doctor Who Locations Guide
Children's Hideout
Kitty leads Bill and the Doctor to the abandoned building where a number of the urchins are living and they tell about what they know in episode 10x03 “Thin Ice”.
Source: The Doctor Who Locations Guide
Building near Pyramid
The resistance looks for a means to approach the monks' pyramid safely in episode 10x08 “The Lie of the Land”.
Moscow Safe House
A spy rushes to his safe house and calls for extraction but is attacked by something that emerges from the ceiling in episode 12x01 “Spyfall - Part One”.
Paris Street
Ada and the Doctor wake up on a destroyed Paris street during World War II and are taken to safety by the English spy Noor Inayat Khan in episode 12x02 “Spyfall - Part Two”.
Source: aaroonio — Instagram via Cultbox
Tesla's Lab
Tesla shows his new friends the alien device he found at his power plant and then spots one of Edison's spies in episode 12x04 “Nikola Tesla's Night of Terror”.